Gene Ca_84_91.1


Sequence ID Ca_84_91.1  add to my list
Species Coffea arabica
Alias No gene alias
Length 343aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 343 amino acids

>Ca_84_91.1_COFAR
MKSVELFCASPASTAICSSMDQRSMVRQGGIRRIDHHGHRFGDHHHRHKTRTPIPCSSQI
PISPRAYFDKTRKGNSSAKQNLESLRRKSSADISDLSSPPPTGSSRHLLSDTPLLELLSD
SEHSSSALVPSQPLRSLKYHKFNESTVFRSSMSSTHSYDNPVYEFSWAGRSNDDLHAYKS
SSPRSNNDSSVQNSSTPRKYHDLHARKSSLSRLIHDDFPAQKSSLSRTDTSLSSKSSLTC
RNDGHAYKSPSTPGRPRHQIVELRVSIHCKGCEGKIRKHIAKMEGVTSFSTDLATKKVTV
IGNVTPLGVLTSVSKVKNAEFWSSPASSSSSSSPTVDMSLVSA




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Ca_84_91.1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cc01_g12180 orthology 0.0027 1 565.5 2.1e-161
Oeu040283.1 orthology 0.536 4 215.7 7.1e-56
Oeu058521.1 orthology 0.47 4 233 4.72e-75
PGSC0003DMP400027269 orthology 0.533 6 209.1 4.5e-54
Solyc11g073020.1.1 orthology 0.529 6 206.8 2.2e-53
capan_pan_p010270 orthology 0.488 5 174 1.16e-52
ipotf_pan_p019321 orthology 0.77 3 - -
ipotf_pan_p020149 orthology 0.649 3 138 1.24e-38
itb07g12040.t1 orthology 0.754 3 - -
itb14g16600.t1 orthology 0.634 3 201.8 7.9e-52