Gene Cc00_g13310


Sequence ID Cc00_g13310  add to my list
Species Coffea canephora
Alias No gene alias
Length 426aa
Gene Annotation Putative Uncharacterized protein
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 426 amino acids

>Cc00_g13310_COFCA
MSKQDFLKTQSCVLRVNIDCDGCKDKVRRKLLKIDGVYTVKIDVDQQRVTVTGNVDPATL
IKKLDKAGKHAELWGAQKGGGGAFNLNNQFKNMQIDNFKGGKDNKSQKGGQQAHQLQQMQ
NLKGPKDLKFPPKDQKSVKFSLPDEDDEFDDDDLDEFDDDYDDELDDEFDDGFDGGHHKH
PSAKTIPIMGGGGGGHGPNKGSNGIMNGFLKGVFNGGNAKKGGGADISMQIKGMGGNNDG
KNGNGGKHGKGGNQNQGEGKNGAVNGKGQHNSNGGGKINESWGKNGGGKMSGGMMMNNLP
QGFHDMDMNHRGPVPRNMGQMPQMGGYPMGPAGNMPAVQGLPAGAGMNGGYYQGMGQGNP
YMNPQYMAQMMMNQQQANGGHGMYHPMMYARPPAPMHYGPPMMAPQATDHYTHIFSDENT
DSCSIM




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Cc00_g13310



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_43_818.1 orthology 0.026 1 412.5 8.5e-115
PGSC0003DMP400049789 orthology 0.629 5 156.8 3.3e-38
Solyc01g098760.2.1 orthology 0.616 5 162.9 4.6e-40
capan_pan_p012222 orthology 0.578 3 223 3.16e-68
capan_pan_p033445 orthology 0.72 4 - -
ipotf_pan_p011347 orthology 0.574 4 - -
itb15g11860.t2 orthology 0.574 4 140.6 2.7e-33