Gene PGSC0003DMP400024192


Sequence ID PGSC0003DMP400024192  add to my list
Species Solanum tuberosum
Alias No gene alias
Length 281aa
Gene Annotation PGSC0003DMT400035571 Protein
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 281 amino acids

>PGSC0003DMP400024192_SOLTU
MSYSLVSPNTFALKLKIHCKICEKKLRNMLLKIQGVQSVQIDEKLGNLVISGTVDPTTIL
TMLEKLGRKAELLWEQGQPINVQTITQSKVINSLNDSDIITRQLEQLSRIPGLQTMEVIT
TIRLTIQGESRNDPSDKVLEIRTTNNLNKPSHPFDHSQGDGDGGGGFCAASSSCCGCHHD
AITHSHNTHGCCCHGGNTSKNSCWGKAHPSDSQPPLAPSGSQPPLALTPPSWSSGSTIAS
APPLPYDFYHYQAPPPPSSSPIHHTYYNALSDENANGCAIL




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP549804 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for PGSC0003DMP400024192



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_25_98.1 orthology 0.993 4 121.3 2.6e-27
Ca_63_138.6 orthology 0.993 4 - -
Ca_78_564.2 orthology 1 4 - -
Cc02_g07920 orthology 0.998 4 120.9 1.1e-27
capan_pan_p030739 orthology 0.295 1 224 2.95e-72
capan_pan_p038035 orthology 0.303 1 - -
capan_pan_p041830 orthology 0.3 1 - -
ipotf_pan_p023915 orthology 0.832 3 - -
ipotf_pan_p024814 orthology 0.823 2 152 6.58e-45
itb02g05420.t1 orthology 0.845 3 143.7 2.1e-34