Gene PGSC0003DMP400030742


Sequence ID PGSC0003DMP400030742  add to my list
Species Solanum tuberosum
Alias No gene alias
Length 300aa
Gene Annotation PGSC0003DMT400045360 Protein
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 300 amino acids

>PGSC0003DMP400030742_SOLTU
MKDMFCASQAATAICLSMEELGSSSSSSSVIQLGGGSISGSRAIDRYNPIIRDSRRTGPK
SISAPCSARSPISPKAQSKSRKSTSKESKRSKGVSKKLLIEKDDEKRKSSVSEGNENIFK
TSSWSCKKPGEFITPPGSSRYLLSEKNILDALSDFEPVLKLVDSSSSSSVLEDVKTETHE
SCPPPSASANQVVVLRVSLHCRGCERKMRKHISRMQGVKSFNIDFAAKKVTVTGDVTPLG
VLASISKVKNAQLWTPTLASSVPTAKVNLSNSELNNDKQMVLSHEKIENVTPTTTTIQLM




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP469447 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for PGSC0003DMP400030742



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62010447-RA orthology 0.948 5 - -
AUR62030468-RA orthology 0.761 5 162.5 6.7e-40
Bv5_103030_anmg.t1 orthology 0.842 5 177.6 1.1e-44
Solyc10g085910.1.1 orthology 0.0247 1 497.7 5.6e-141
capan_pan_p021656 orthology 0.0993 2 457 4.71e-164
ipotf_pan_p006474 orthology 0.714 5 194 2.44e-60
itb09g27700.t1 orthology 0.712 5 189.9 2.7e-48