Gene Sspon.01G0003000-3D


Sequence ID Sspon.01G0003000-3D  add to my list
Species Saccharum spontaneum
Alias No gene alias
Length 398aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 398 amino acids

>Sspon.01G0003000-3D_SACSP
MGEEKKAGKDGGGDKKKDAGAAPQPIVLKVDLHCAGCASKVRKAIKRAPGASALRIAGGY
IRNPLAVGGGCFLFLTVRSIALWPRLRAGVESVTPDMAAGKVVVTGPADAVELKERIEAR
AKKSVQIVSAGAGPPKKDKEKEKEKKADGGEKKADKEKGGDGGEKKADKEKGGGGEKKAE
KEKGGGGGEKKGDKEKGADKLKEEKKPKEETVTLKIRLHCDGCIDRIKRRISKIKGVKDV
AFDAAKDLVKVTGTMDAAALPAYLREKLSRDVEIVAPGKKDGGGGDKKDKGAGDGGDKKK
DGGGEEKKDKAVAASASVAPMPLADAGMYQMPPHYGYGAYPPAPGGYYGGAPPHNHAGGF
YPNAGVHYPPAPAYGYGPSHLHAPQMFSDENPNACSVM




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP342504 Unannotated cluster
4 GP464372 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Sspon.01G0003000-3D



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.01G0003000-1P ultra-paralogy 0.0061 0 - -
Sspon.01G0018780-1A ultra-paralogy 0.0037 0 - -
Sspon.01G0018780-2B ultra-paralogy 0.0127 0 - -
maize_pan_p002998 orthology 0.093 2 - -
maize_pan_p022093 orthology 0.128 2 - -
maize_pan_p037219 orthology 0.164 2 - -
sorbi_pan_p008991 orthology 0.0523 1 - -