Gene bradi_pan_p042341
| Sequence ID | bradi_pan_p042341 add to my list |
|---|---|
| Species | Brachypodium distachyon |
| Alias | No gene alias |
| Pangenome status | Dispensable (2/54) |
| Length | 432aa |
Length: 432 amino acids
>bradi_pan_p042341_BRADI MMERRSLLEALVTAAQGGSSQTSVLSMLKYAVMPIAKVFTVCFMGFLMATKYVNILQPNG RKLLNGLVFSLLLPCLIFSQLGSAITIEKLLQWWYIPVNIVVGAVSGSLIGFVVASIIRP PYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPSNPFGDSDKCSQDGNAYISFGQWVGAII VYTYVFKMLSPPPGETFDGEEEKLPVMASGENTLPELGKYPTSTRNSTVPENEPLLSVEG DKKGATSLGSKIIGYVRCVVKFLKDKQLLQPPIIASVFAIGIGVVPFLKGLIFTDDAPLF FFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSKRLGMRTTIAIIFARLVLVPIAGVGIV LLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWVHIFAVFSM AAWIIFYLTLLF
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
| 2 | GP015273 | Unannotated cluster |
| 3 | GP040583 | Unannotated cluster |
| 4 | GP132349 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for bradi_pan_p042341
Represented sequence(s):
Unrepresented genome(s):
BRADI_ABR9_333_v1.ABR9_r
BRADI_ABR2_337_v1.ABR2
BRADI_ABR3_343_v1.ABR3
BRADI_ABR4_364_v1.ABR4
BRADI_ABR5_379_v1.ABR5
BRADI_ABR6_336_v1.ABR6_r
BRADI_ABR7_369_v1.ABR7
BRADI_ABR8_356_v1.ABR8
BRADI_Adi_10_381_v1.Adi-10
BRADI_Adi_12_359_v1.Adi-12
BRADI_Adi_2_372_v1.Adi-2
BRADI_Arn1_355_v1.Arn1
BRADI_Bd18_1_362_v1.Bd18-1
BRADI_Bd1_1_349_v1.Bd1-1
BRADI_Bd21_3_378_v1.Bd21-3_r
BRADI_Bd21v2_1_283_Bd21v2
BRADI_Bd29_1_346_v1.Bd29-1
BRADI_Bd2_3_353_v1.Bd2-3
BRADI_Bd30_1_344_v1.Bd30-1
BRADI_Bd3_1_328_v1.Bd3-1_r
BRADI_BdTR10c_374_v1.BdTR10C
BRADI_BdTR11a_380_v1.BdTR11A
BRADI_BdTR11g_357_v1.BdTR11G
BRADI_BdTR11i_363_v1.BdTR11I
BRADI_BdTR12c_352_v1.BdTR12c
BRADI_BdTR13a_334_v1.BdTR13a
BRADI_BdTR13c_365_v1.BdTR13C
BRADI_BdTR1i_345_v1.BdTR1i
BRADI_BdTR2b_376_v1.BdTR2B
BRADI_BdTR2g_367_v1.BdTR2G
BRADI_BdTR3c_354_v1.BdTR3C
BRADI_BdTR5i_370_v1.BdTR5I
BRADI_BdTR7a_329_v1.BdTR7a
BRADI_BdTR8i_348_v1.BdTR8i
BRADI_BdTR9k_358_v1.BdTR9K
BRADI_Bis_1_338_v1.Bis-1
BRADI_Foz1_366_v1.Foz1
BRADI_Gaz_8_339_v1.Gaz-8
BRADI_Jer1_375_v1.Jer1
BRADI_Kah_1_351_v1.Kah-1
BRADI_Kah_5_342_v1.Kah-5
BRADI_Koz_1_330_v1.Koz-1
BRADI_Koz_3_368_v1.Koz-3
BRADI_Luc1_347_v1.Luc1
BRADI_Mig3_377_v1.Mig3
BRADI_Mon3_350_v1.Mon3
BRADI_Mur1_373_v1.Mur1
BRADI_Per1_326_v1.Per1
BRADI_Ron2_360_v1.RON2
BRADI_S8iiC_340_v1.S8iiC
BRADI_Sig2_371_v1.Sig2
BRADI_Tek_2_341_v1.Tek-2
BRADI_Tek_4_332_v1.Tek-4
BRADI_Uni2_327_v1.Uni2
| 1. | 2. | 3. | 4. | 5. | 6. | 7. | |
|---|---|---|---|---|---|---|---|
| 1. Brdisv1ABR21021647m_1 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 2. Brdisv1ABR21021644m_1 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 3. Brdisv1ABR21021645m_1 | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 4. Brdisv1ABR21021646m_1 | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 |
| 5. Brdisv1ABR21021648m_1 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 |
| 6. Brdisv1ABR21021643m_1 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 |
| 7. Brdisv1ABR9_r1018483m_1 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| bradi_pan_p020277 | orthology | 0 | 1 | - | - |
| bradi_pan_p020319 | orthology | 0 | 1 | - | - |
| bradi_pan_p031935 | orthology | 0 | 1 | - | - |
| bradi_pan_p032017 | orthology | 0 | 1 | - | - |
| bradi_pan_p032347 | orthology | 0 | 1 | - | - |
| bradi_pan_p034443 | orthology | 0 | 1 | - | - |
| bradi_pan_p052815 | orthology | 0 | 1 | - | - |