Gene brana_pan_p001089
Sequence ID | brana_pan_p001089 add to my list |
---|---|
Species | Brassica napus |
Alias | No gene alias |
Pangenome status | Core (3/3) |
Length | 393aa |
Length: 393 amino acids
>brana_pan_p001089_BRANA MGFWSLLEVASMPVIQVLFISVVGAFLATDRCKLFPVEARNSMNKVVFVLFAPALMFANL AQTVTLEDMISWWFMPVNMGLTFLIGGILGWIVVKILKPPPYLEGLIVATCSSGNMGNLP IILVPAICDEDKSPFGNRSVCRTVGLSYASFSMALGGFYIWTYTFRLIKGSAMKFKDIEE SEQKAIRSSNSDLEADRKTHLLGAPEETLVKQETGFWRKGVDFLHEILEELRAPPSVGAI IGFIFGAVTWLRNLIIGDDAPLRIVQTTAKLLGDGTIPCMTIILGGNLIQGLRSSAVKPV VVLGIVCVRYILLPIIGIGIVKSAESFGFLPADPLFQYVLMLQFTLPPAMNIGTMTQLYN VGQDECSVLMLWTYLVAILALTVWSTIFLHLLV
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
2 | GP015273 | Unannotated cluster |
3 | GP040583 | Unannotated cluster |
4 | GP463648 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for brana_pan_p001089
Represented sequence(s):
BRANA_v5.0
BRANA_Tapidor_v6.3
BRANA_Darmor_v8.1
1. | 2. | 3. | 4. | 5. | |
---|---|---|---|---|---|
1. BnaA07g02800.1D2 | 0.00 | 0.72 | 0.88 | -0.00 | 2.64 |
2. BnaC07g08180.1D2 | 0.72 | 0.00 | 1.77 | 0.72 | -0.00 |
3. BnaA02g22990.1T | 0.88 | 1.77 | 0.00 | 0.88 | 1.77 |
4. GSBRNA2T00026547001 | -0.00 | 0.72 | 0.88 | 0.00 | 2.64 |
5. GSBRNA2T00013056001 | 2.64 | -0.00 | 1.77 | 2.64 | 0.00 |