Gene brana_pan_p001233


Sequence ID brana_pan_p001233  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 265aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 265 amino acids

>brana_pan_p001233_BRANA
MRISDIFCSSPASTAVRRSTLPHDGEITRGRRSVDSLRRSQNLNNNRDKTAPCFASEMPF
IPIPRPVMSCRNSFESSRGRKITTAHGGEVQTRRKSSADVSDVLRRTRSSLQGSSSSRYL
LKDHKSYKEDDKNLWLSSSDRSKDLIPFRDRNVTISSSSTSSSSSSSVTNGSSPSPSTND
DQVVVLRVSIHCKGCEGKVRKHISKMEGVTSYTIDIATKKVTVVGKVTPSGVVESISKVK
FAQLWPSSSSPSFPHVPNHSPLIKS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily
SODIUM POTASSIUM ROOT DEFECTIVE 2/3
IPR016578 		SODIUM POTASSIUM ROOT DEFECTIVE 2/3 Family

IPR006121 IPR036163 IPR016578
Figure 1: IPR domains for brana_pan_p001233



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00050356001
GSBRNA2T00127844001
BRANA_Darmor_v8.1
BnaA04g18960.1D2
BnaC04g45920.1D2
Unrepresented genome(s):
BRANA_Tapidor_v6.3
Download sequences FASTA

  1. 2. 3. 4.
1. BnaA04g18960.1D2 0.00 4.89 -0.00 3.43
2. BnaC04g45920.1D2 4.89 0.00 4.48 -0.00
3. GSBRNA2T00050356001 -0.00 4.48 0.00 3.46
4. GSBRNA2T00127844001 3.43 -0.00 3.46 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT2G28660.1 orthology 0.165 3 329 1.26e-114
braol_pan_p037483 orthology 0.0252 2 439 1.35e-157
brarr_pan_p013848 orthology 0.0132 1 450 4.59e-162