Gene brana_pan_p008102


Sequence ID brana_pan_p008102  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 284aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 284 amino acids

>brana_pan_p008102_BRANA
MEKKAEEPQVKKTDDKKEEEKKKEPQEIVLKIFMHCEGCAKKIHRCLKGFEGVEDVTTDC
KTSKVVVKGEKADPLKVLQRLQRKSHRPVELLSPIPEPKPVSDEPEKKEEKPKPQEKKEE
VVTVVLRVHMHCEACAMEIQKRIMRMKGVESVEPDFKASQVSVKGVFTPEKLVEYVNKKI
GKHAAIVKQDPSLKPPEKEKETKDKDEKKKEEEQPKESKEAKEDGGGVAKSAAGDGGAAA
EGGDKVVDIKKNEYQYQPPRYPVEMFAYPPQIFSDENPNACTMM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p008102



Represented sequence(s):
BRANA_Tapidor_v6.3
BnaA03g15300.1T
BnaC02g03940.1T
BRANA_v5.0
GSBRNA2T00082763001
GSBRNA2T00142198001
BRANA_Darmor_v8.1
BnaC03g16140.1D2
BnaA03g15340.1D2
Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. BnaA03g15340.1D2 0.00 2.03 5.85 4.35 2.14 -0.00
2. BnaC03g16140.1D2 2.03 0.00 2.88 4.35 -0.00 2.14
3. BnaA03g15300.1T 5.85 2.88 0.00 1.43 2.88 5.85
4. BnaC02g03940.1T 4.35 4.35 1.43 0.00 4.35 4.35
5. GSBRNA2T00082763001 2.14 -0.00 2.88 4.35 0.00 2.14
6. GSBRNA2T00142198001 -0.00 2.14 5.85 4.35 2.14 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G50740.3 orthology 0.0993 3 320 2.69e-110
MELO3C002372.2.1 orthology 0.466 5 261 1.98e-86
braol_pan_p032028 orthology 0.001 1 402 2.5e-142
brarr_pan_p007939 orthology 0.0282 2 358 7.07e-126
cucsa_pan_p017723 orthology 0.468 5 262 4.64e-87