Gene brana_pan_p013116


Sequence ID brana_pan_p013116  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 156aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 156 amino acids

>brana_pan_p013116_BRANA
MTTIEMRVHMDCVGCESRVKSALQKMRGVDEVEIDMVQQKVTVTGYADQKKVLKKVRKTG
RRAELWQLPFNPDHSSLLGGGSNSTNGGYFYNPHGCNGPINHHAPVPGSSYNYYKHGYDS
NDYSSYQHHPVHASIFSHQAGSKFSDENPNAACSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p013116



Represented sequence(s):
BRANA_Darmor_v8.1
BnaA09g56970.1D2
BnaC08g47740.1D2
BnaC08g47750.1D2
BRANA_v5.0
GSBRNA2T00122112001
GSBRNA2T00031753001
BRANA_Tapidor_v6.3
BnaA09g41370.1T
BnaC08g49490.1T
BnaC08g49500.1T
Download sequences FASTA

  1. 2. 3. 4. 5. 6. 7. 8.
1. BnaA09g56970.1D2 0.00 0.64 83.50 -0.00 0.64 83.50 1.29 -0.00
2. BnaC08g47740.1D2 0.64 0.00 83.50 0.64 -0.00 83.50 0.64 0.66
3. BnaC08g47750.1D2 83.50 83.50 0.00 83.50 83.50 -0.00 3.59 101.90
4. BnaA09g41370.1T -0.00 0.64 83.50 0.00 0.64 83.50 1.29 -0.00
5. BnaC08g49490.1T 0.64 -0.00 83.50 0.64 0.00 83.50 0.64 0.66
6. BnaC08g49500.1T 83.50 83.50 -0.00 83.50 83.50 0.00 3.59 101.90
7. GSBRNA2T00031753001 1.29 0.64 3.59 1.29 0.64 3.59 0.00 0.66
8. GSBRNA2T00122112001 -0.00 0.66 101.90 -0.00 0.66 101.90 0.66 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT1G06330.1 orthology 0.0869 2 275 9.71e-97
Cg2g008690.1 orthology 0.532 7 187 4.83e-62
Cm103060.1 orthology 0.526 8 187 5.72e-62
Cs2g15540.1 orthology 0.526 8 189 1.15e-62
FvH4_6g27360.1 orthology 0.475 3 185 4.27e-61
MELO3C018725.2.1 orthology 0.593 6 166 9.17e-54
Manes.15G048400.1 orthology 0.421 6 202 6.12e-68
braol_pan_p024201 orthology 0 1 321 1.06e-114
brarr_pan_p028890 orthology 0 1 321 9.45e-115
cajca.ICPL87119.gnm1.ann1.C.cajan_23872.1 orthology 0.552 9 177 2.48e-58
cucsa_pan_p019751 orthology 0.585 6 169 7.45e-55
medtr_pan_p000903 orthology 0.586 7 182 3.43e-60
phavu.G19833.gnm2.ann1.Phvul.005G095400.1 orthology 0.56 8 175 2.22e-57
soybn_pan_p032804 orthology 0.553 9 180 4.74e-59
thecc_pan_p014674 orthology 0.407 7 159 7.8e-51
vitvi_pan_p026446 orthology 0.452 5 193 2.79e-64