Gene brana_pan_p014467
| Sequence ID | brana_pan_p014467 add to my list | ||
|---|---|---|---|
| Species | Brassica napus | ||
| Alias | No gene alias | ||
| Pangenome status | Dispensable (2/3) | ||
| Length | 431aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 431 amino acids
>brana_pan_p014467_BRANA MSKEEFMNIQTCVLKVNIHCEGCKQKVKKILHKIEGVFTTKIDADQGKVTVSVSGSVDPS VLIEKLAKSGKHAEVWGAPKGNNNPNQSHDSHLVNQLKGRQIDNKKGSGGKNNNNDKCPK NVGSGGGGNNPHQIQKMKGFQDMKLPQQLKDLNGSVPENKNQKQPGAKFNVPEEEEDDYF SDDDDEFTDVGDEDSDDDEFDDLPSPSNKMKPNMMMPNNQQMMMNANLGGGPTKNGGKGV YGGGGGKGDSGGAGNQNQGGGKNGGQNANGVHQQDGKNGGGPNVGGGGLPAGFLPMGGGV PPNMSMPIGGLMGMGGLMGNIPAVHGLPATGASGIPPGYFQRAGPDPIQMQHQQQQQQYL AAVMNQQRAMENERFQPMMYARPPLAVNYMPPHIHLHQYPNPYDPYPYPPHGNDQYSHVS NEENTSSCDIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p014467
Represented sequence(s):
Unrepresented genome(s):
BRANA_Darmor_v8.1
BRANA_v5.0
BRANA_Tapidor_v6.3
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT3G06130.1 | orthology | 0.267 | 3 | - | - |
| MELO3C021404.2.1 | orthology | 0.692 | 5 | - | - |
| braol_pan_p034967 | orthology | 0.0128 | 1 | - | - |
| brarr_pan_p004859 | orthology | 0.0332 | 2 | - | - |
| cucsa_pan_p012169 | orthology | 0.66 | 5 | - | - |