Gene brana_pan_p018385


Sequence ID brana_pan_p018385  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 317aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 317 amino acids

>brana_pan_p018385_BRANA
MDQPSQPSSSSPTVRLGGRAIDRHNPIIRDGRRFTPPPSPNHNSSSAPPSSSSTYHTPLK
TRLGLESSEATRVSKRKSKKSQFDAGKSPISCFTSDTPQGSSRYLLSNPVFFDGFVDSDP
IPLPIEPEITMDDDLDKNHEDTLVINASKHLSSSQSFLEKKQPDFFDGFLDYDPVMSPDN
PFSEPTKDASSPDNPLSEPTKASPTASQSSLEDKDSSSPDFKFSPPQPPPPPPPPSPPPM
ENNSSSDQVVVLRVSLHCKGCAGKVKKHLSKLKGVTSFNIDFAAKKVTVTGDVTPLTVLA
SISKVKNAQVWPETIQK


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p018385



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00032357001
GSBRNA2T00074140001
BRANA_Darmor_v8.1
BnaA10g30010.1D2
BnaA06g21350.1D2
BRANA_Tapidor_v6.3
BnaA06g22520.1T
BnaA10g36440.1T
Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. BnaA10g30010.1D2 0.00 4.54 3.40 8.91 4.54 0.73
2. BnaA06g21350.1D2 4.54 0.00 8.26 4.51 -0.00 4.83
3. BnaA10g36440.1T 3.40 8.26 0.00 13.11 8.26 8.34
4. BnaA06g22520.1T 8.91 4.51 13.11 0.00 4.51 9.95
5. GSBRNA2T00032357001 4.54 -0.00 8.26 4.51 0.00 4.83
6. GSBRNA2T00074140001 0.73 4.83 8.34 9.95 4.83 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G02600.1 orthology 0.146 3 410 7.24e-145
braol_pan_p025290 orthology 0.0049 1 508 6.57e-183
brarr_pan_p030721 orthology 0.0475 2 441 1.12e-156