Gene brana_pan_p022238


Sequence ID brana_pan_p022238  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 275aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 275 amino acids

>brana_pan_p022238_BRANA
MGEEVKPEEKEAVSAPEAVPEPASAEDEKKDVAEEKQAATEEENPTVEEEPQPPPPPPPF
ILYVDLHCVGCAKKIQRSILKIRGVEEVVIDMNENQVTVKGVLDPQAVCNKIKKKTKRMA
KVLSPLPAAEGEPLPPVITSQVSGLTTVELSVNMHCQACADQLKKKILKMRGVQTTVTEH
TNGKVIVTGTMDEEKLVDYVYRRTKKQARIVPQPDPEAEKPEVEEEKKEETGEGGEEPAE
TGEEKEAGDEKEDGGEEMEASEEMRVWEEEGMKRM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP126431 Unannotated cluster
4 GP077890 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p022238



Represented sequence(s):
BRANA_Tapidor_v6.3
BnaA06g27950.1T
BnaC07g29960.1T
BRANA_v5.0
GSBRNA2T00023382001
GSBRNA2T00147546001
BRANA_Darmor_v8.1
BnaA06g30440.1D2
BnaA06g25710.1D2
BnaC07g33200.1D2
Download sequences FASTA

  1. 2. 3. 4. 5. 6. 7.
1. BnaA06g25710.1D2 0.00 6.61 6.61 1.56 14.03 8.68 -0.00
2. BnaA06g30440.1D2 6.61 0.00 1.06 4.48 0.86 -0.00 3.61
3. BnaC07g33200.1D2 6.61 1.06 0.00 5.14 0.86 1.06 3.61
4. BnaA06g27950.1T 1.56 4.48 5.14 0.00 8.31 7.03 -0.00
5. BnaC07g29960.1T 14.03 0.86 0.86 8.31 0.00 0.86 10.29
6. GSBRNA2T00147546001 8.68 -0.00 1.06 7.03 0.86 0.00 7.14
7. GSBRNA2T00023382001 -0.00 3.61 3.61 -0.00 10.29 7.14 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G24580.1 orthology 0.135 3 - -
braol_pan_p022609 orthology 0.0212 2 357 1.12e-124
brarr_pan_p028152 orthology 0.0133 1 358 3.5e-125