Gene brana_pan_p026835


Sequence ID brana_pan_p026835  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 175aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 175 amino acids

>brana_pan_p026835_BRANA
MSQPLMYYQYMQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGKVEPE
AVFQTVSKTGKKTSYWPVEAEAEANAEAEPKVETETKPEAETKTEGKVVEVLGAKVDATK
VEPEADVEPKLAETETKTEGKADDEVLDAKVDPKVDAKADVEQKLVEAETKPPQV


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP239638 Unannotated cluster
3 GP341755 Unannotated cluster
4 GP463817 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p026835



Represented sequence(s):
BRANA_Darmor_v8.1
BnaC04g30610.1D2
BnaA04g03680.1D2
BRANA_v5.0
GSBRNA2T00076402001
BRANA_Tapidor_v6.3
BnaA08g23740.1T
BnaA06g40110.1T
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaC04g30610.1D2 0.00 8.20 0.57 8.20 -0.00
2. BnaA04g03680.1D2 8.20 0.00 7.43 -0.00 8.20
3. BnaA08g23740.1T 0.57 7.43 0.00 7.43 0.59
4. BnaA06g40110.1T 8.20 -0.00 7.43 0.00 8.20
5. GSBRNA2T00076402001 -0.00 8.20 0.59 8.20 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G56240.1 orthology 0.236 2 - -
braol_pan_p031860 orthology 0.0064 1 190 1.95e-62