Gene brana_pan_p027540


Sequence ID brana_pan_p027540  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 314aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 314 amino acids

>brana_pan_p027540_BRANA
MGEEVKPEVKEAAPAPEAVPESVSSEEEEKRDVAEEKQEAAAKEEQPTVEEESQPPPPPP
PPPFILYVDLHCVGCAKKIERSVLKIRGVEEVVMDMNENQVTIKGVLDPQAVCNKIKKKT
KRMAKVLSPLPAAEGEPLPPTINSQVSGLTTVELNVNMHCQACADQLKKKILKMKGVQTT
VTEYTTGKVIVTGTMDEEKLVDYVYRRTKKQARIVPQPDPEPEKSAAEEDKKEESGEGPE
KPAEETGGEKEEEKKEEEDGGGEETEAEVTEEMATAEEEGMKRMMYYYQPLYVIERVPPP
QLFSDENPNACCIS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP126431 Unannotated cluster
4 GP077890 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p027540



Represented sequence(s):
BRANA_Tapidor_v6.3
BnaC08g19490.1T
BnaC02g41500.1T
BRANA_Darmor_v8.1
BnaA02g35960.1D2
BnaC02g48430.1D2
BRANA_v5.0
GSBRNA2T00120355001
GSBRNA2T00120311001
Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. BnaA02g35960.1D2 0.00 2.96 -0.00 2.96 -0.00 2.96
2. BnaC02g48430.1D2 2.96 0.00 2.96 -0.00 2.96 -0.00
3. BnaC08g19490.1T -0.00 2.96 0.00 2.96 -0.00 2.96
4. BnaC02g41500.1T 2.96 -0.00 2.96 0.00 2.96 -0.00
5. GSBRNA2T00120355001 -0.00 2.96 -0.00 2.96 0.00 2.96
6. GSBRNA2T00120311001 2.96 -0.00 2.96 -0.00 2.96 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G24580.1 orthology 0.152 3 328 1.42e-112
braol_pan_p055195 orthology 0.0249 2 383 4.05e-134
brarr_pan_p027604 orthology 0 1 398 6.27e-140