Gene brana_pan_p035365


Sequence ID brana_pan_p035365  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 373aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 373 amino acids

>brana_pan_p035365_BRANA
MGEQKKEETVTKPEGDKKPVDGGNNTVVVMKLDMHCEGCGKKIKRILKKHKGVEDVNIDY
KADKLTVVGNVDPSAVRDKVAERMKRKVEIVSTVAPKKEAPPPSGGEKKVVEEKPAEKKP
ADEKPAGEKKVEMKKDEGEKKAPSPPAPPKESTVVLKTKLHCEGCEHKIKRIVNKIKGVK
SVAIDSTKDLVIVKGIIDVKQLTPYLNEKLKRTVEVVPPKKEEGATVAAAAAPAGGEKKD
KDVGEKKDGGGEKKKEVASAGGGDGGATLDVKKSEYSGYGYQPQPMYYNPPGQVYGQQHY
MMQGQSSQSYVQEPYVNQGYVHESYMNQGYGQGYGQQAPPPPYMNHQGYADPYAHMRAPE
MFSDENPNGCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p035365



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00119598001
GSBRNA2T00080029001
BRANA_Tapidor_v6.3
BnaC02g01980.1T
BRANA_Darmor_v8.1
BnaC02g04600.1D2
BnaC02g03770.1D2
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaC02g04600.1D2 0.00 4.60 2.45 -0.00 13.05
2. BnaC02g03770.1D2 4.60 0.00 1.23 4.62 8.63
3. BnaC02g01980.1T 2.45 1.23 0.00 2.46 8.63
4. GSBRNA2T00119598001 -0.00 4.62 2.46 0.00 13.05
5. GSBRNA2T00080029001 13.05 8.63 8.63 13.05 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G03380.1 orthology 0.154 2 - -
braol_pan_p004888 orthology 0.0097 2 506 9.67e-181
brarr_pan_p012244 orthology 0.0097 2 511 9.49e-183