Gene brana_pan_p037105
Sequence ID | brana_pan_p037105 add to my list | ||
---|---|---|---|
Species | Brassica napus | ||
Alias | No gene alias | ||
Pangenome status | Core (3/3) | ||
Length | 541aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 541 amino acids
>brana_pan_p037105_BRANA MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAEQGKVTVSGNVDPSVL IKKLLKSGKHAEIWGAPKGNNTIQNQPNLANQFKGMQIDHGGKGGGGNGGGNNNKVQKGG GGGGGGPPPKMGGGGGGGGPPMKMSGGGGGGGPPMKMGGGGGGMKMGGGGDDDDDFSDDE FDDDEFDEDDEFDDDDLEDDEFDDHAPPPNKMKPMMGGGPGGNMMMPNNMMPNMMMPNAQ QMLNAHKNGGGPGPAGGKIVGKGGPGGVPFPVQMPSGGGGNGGKKGGPGGGGGGNVGNPN QNGGKSGGGGGGQFDGKNGGGGGGPNGNKGGGGGQMIGGPNGGKKGGAGGGGGGGGGPMS GGLPPGFRPMGGGNGGGPPTMSMPMSGAMGGPIGNLPSMGGGGPGAMGNNNMQAVQGLPA MGPGGGGGPSVGAPPGYFQGHGSNGGGQDSVPGNPYLQQQQQQQQQQQYLAAVMNQQRAM GNERFQPMMYARPPPAVNYLPPEPYQQHPYPYPYPYQYPPHGGDQYSHYFNDENTSSCNI M
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP023608 | Unannotated cluster |
3 | GP040483 | Unannotated cluster |
4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p037105
Represented sequence(s):
BRANA_Tapidor_v6.3
BRANA_Darmor_v8.1
BRANA_v5.0
1. | 2. | 3. | 4. | |
---|---|---|---|---|
1. BnaA02g05500.1D2 | 0.00 | 6.21 | -0.00 | -0.00 |
2. BnaC02g10690.1D2 | 6.21 | 0.00 | 5.34 | 6.31 |
3. BnaA02g05180.1T | -0.00 | 5.34 | 0.00 | -0.00 |
4. GSBRNA2T00086898001 | -0.00 | 6.31 | -0.00 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT5G19090.1 | orthology | 0.116 | 2 | 353 | 3.11e-115 |
MELO3C021404.2.1 | orthology | 0.558 | 4 | - | - |
brarr_pan_p000054 | orthology | 0.0049 | 1 | 509 | 1.46e-175 |
cucsa_pan_p012169 | orthology | 0.526 | 4 | - | - |