Gene brana_pan_p040071


Sequence ID brana_pan_p040071  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 240aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 240 amino acids

>brana_pan_p040071_BRANA
MEKSRMPRNVYEPLKTYFLKVNINCHGCNRKVKKTLRKVEGVYSVDIDTDQQAVIVRGNL
DPEILVKKLNRRGKYAELLFKSPFHKDQFGNHHDNRSLRNAPYNFGNNHFNNVPSYERQS
DGEMMKMMMANNMKPVMMNDADYFQMNDSSEDFQELFGETAQRHNYDEEVHPNLMRDMEL
GYSNAYPAAETMNMHIPGRSNNMMMNERSFHSQMMNGPSLVPQFMNQEQFSARQLNGFYY


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p040071



Represented sequence(s):
BRANA_Darmor_v8.1
BnaC04g36600.1D2
BRANA_Tapidor_v6.3
BnaC04g36930.1T
BnaA04g07480.1T
BRANA_v5.0
GSBRNA2T00112783001
GSBRNA2T00114474001
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaC04g36600.1D2 0.00 -0.00 4.37 -0.00 3.89
2. BnaC04g36930.1T -0.00 0.00 4.37 -0.00 3.89
3. BnaA04g07480.1T 4.37 4.37 0.00 4.37 -0.00
4. GSBRNA2T00112783001 -0.00 -0.00 4.37 0.00 3.89
5. GSBRNA2T00114474001 3.89 3.89 -0.00 3.89 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G37860.1 orthology 0.148 3 336 1.13e-117
AUR62023201-RA orthology 1 5 - -
Bv2_027590_uyzx.t1 orthology 1 5 - -
braol_pan_p024136 orthology 0.0102 2 482 1.19e-175
brarr_pan_p011412 orthology 0.0228 1 459 9.09e-167