Gene brana_pan_p042083


Sequence ID brana_pan_p042083  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 506aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 506 amino acids

>brana_pan_p042083_BRANA
MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAEQGKVTVSGNVDPSVL
IKKLLKSGKHAEIWGAPKANNTNQNQPNLANQLKGMQIDHGGKGGGGGNNNKGQKGGCGG
GGGGGGGGGGGGAPPPKMILPQLTPQQMQQLNPQQLQQLQQLQQMKAFQDLKLPPPQLKG
PGPGSVPMNKNSQNPNQKAVKFDVPEEDDDDFSDDDEFDDDEFDDDNEFDDELDDDEFDD
RPPPNKMKPMMGGGGGNGGMKGGLPGGGGGNVGNPNQGGGKNGGKNGGGGGHPLDVKNGG
GGGGPSGNNKGGGQMIGGPNGGKKGGAGGGGGGPMGGGLPPGFRPIGGGNGGPPTMNMPM
GSLPSMGGGSGPMGNNMQAVQGLPAMGPGGGGGGSAAGAPPGYFQGHGGAGGGQDSMPGN
PYLQQQQQQQQQQYLTAVMNQQRAMGNERFQPMMYARPPPDVNYLPPQPHQQHPYSYPYP
YPYPPHGGDQYSNYFNDENTSSCNIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily
Armadillo-type fold
IPR016024 		Armadillo-type fold Homologous_superfamily

IPR006121 IPR036163 IPR016024
Figure 1: IPR domains for brana_pan_p042083



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00078461001
BRANA_Darmor_v8.1
BnaC09g43210.1D2
BRANA_Tapidor_v6.3
BnaC03g45700.1T
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G19090.1 orthology 0.116 2 - -
MELO3C021404.2.1 orthology 0.558 4 - -
braol_pan_p007803 orthology 0.0192 1 - -
cucsa_pan_p012169 orthology 0.527 4 - -