Gene brana_pan_p044785
| Sequence ID | brana_pan_p044785 add to my list | ||
|---|---|---|---|
| Species | Brassica napus | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 338aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 338 amino acids
>brana_pan_p044785_BRANA MEEKKPEEEKKEGEGKKVEADEKKGEESEKKTQEGEPTKDSKEDSPPAEPEAPAPPPPPQ EVILKVYMHCEGCARKVRRCLKGFEGVEDVMTDCKTGKVVVKGEKADPLKVLARVQRKTH RQVVLVSPIPPPSQPAEKKAEEEKPKVEEKKVEPPVVVTVVLKVHMHCEACASEIKKRIM RMKGVESAESDLKGSQVTVKGVFEPQKLVEHIYKRTGKHAAIMKIDPPPPPPPEEAAAAA EADKKEEGKGDKGGGESKGEEGKDEKKEGEGEAAENKNGGGGGEEEGKVVDVRKIENPYY YYYNYQLPRVAVPPMEMPPHAYPPQLFSDENPNSCSIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP070448 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p044785
Represented sequence(s):
BRANA_Tapidor_v6.3
BRANA_v5.0
BRANA_Darmor_v8.1
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. BnaA09g07430.1D2 | 0.00 | 1.47 | -0.00 | 5.79 | -0.00 | 2.15 |
| 2. BnaU01g40670.1D2 | 1.47 | 0.00 | 1.47 | 41.05 | 1.47 | -0.00 |
| 3. BnaC02g28670.1T | -0.00 | 1.47 | 0.00 | 8.72 | -0.00 | 2.15 |
| 4. BnaC02g28630.1T | 5.79 | 41.05 | 8.72 | 0.00 | 6.34 | 157.63 |
| 5. GSBRNA2T00094585001 | -0.00 | 1.47 | -0.00 | 6.34 | 0.00 | 2.15 |
| 6. GSBRNA2T00088447001 | 2.15 | -0.00 | 2.15 | 157.63 | 2.15 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G63530.1 | orthology | 0.0977 | 2 | 328 | 7.91e-112 |
| brarr_pan_p028770 | orthology | 0.0021 | 1 | 395 | 2.79e-139 |