Gene brana_pan_p070531


Sequence ID brana_pan_p070531  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Specific (1/3)
Length 282aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 282 amino acids

>brana_pan_p070531_BRANA
MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDSEQGKVTVSGSVDPSVL
IKKLAKSGKHAEIWGAPKGNNNNQNQLANQMKGMQIDNGKGVGGKNNNNNNKAPKNGGGG
GGGGGGGGGNRNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXLLLYIYCNKKKKFTLPQPSATANVSWSQLLNL




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p070531



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00027105001
Unrepresented genome(s):
BRANA_Darmor_v8.1
BRANA_Tapidor_v6.3


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G06130.1 orthology 0.435 2 - -
MELO3C021404.2.1 orthology 0.86 4 - -
brana_pan_p057676 ultra-paralogy 0.152 0 - -
brarr_pan_p028538 orthology 0.333 1 - -
cucsa_pan_p012169 orthology 0.828 4 - -