Gene braol_pan_p001592
| Sequence ID | braol_pan_p001592 add to my list | ||
|---|---|---|---|
| Species | Brassica oleracea | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 617aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 617 amino acids
>braol_pan_p001592_BRAOL MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAEQGKVTVSGNVDPSVL IKKLLKSGKHAEIWGAPKGNNTVQNQPNLANQFKGMQVDHGGKGGGGNGGGNNNKGQKGG GGGGGGGQPPKMGGDGGVGGPPMKMGGGGGGGGPPMKMGGGGPPMKMGGGGGGGAPPMKM GGGGPPMKMSLPQLTPQQMQQLNPQQLQQLQQLQQMKGFQDLKLPPQMKGPGPGSVPVNK NPQNPNQKAVKFDVPEDDDDDFSDDEFDDDEFDEDDEFDDDDLEDDEFDDHPPPNKMKPM MGGPGGNMMMPNNMMPNMMMPNAQQMLNAHKNGGGPGPAGGKIVGKGGPGGGPFPVQMPS GGGGNGGKKGGPGGGGGGNVGNPNQNGGKNGGKSGGGGGGQFDGKNGGGGGGPNGNKGGG GGQMIGGPNGGKKGGAGGGGGPMSGGLPPGFRPMGGGNGGGPPTMSMPMGGPIGNLPSMG GGGPGPMGNNNMQAVQGLPAMGPGGGGGPSVGAPPGYFQGHGSNGGGQDSVPGNPYLQQQ QQQQYLAAVMNQQRAMGNERFQPMMYARPPPAVNYLPPEPYQQHPYPYPYPYQYPPHGGD QYSHYFNDENTSSCNIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for braol_pan_p001592
Represented sequence(s):
BRAOL_HDEM
BRAOL_TO1000
BRAOL_A2_v1.0
| 1. | 2. | 3. | 4. | 5. | |
|---|---|---|---|---|---|
| 1. Bol007140 | 0.00 | 0.32 | 0.32 | 0.32 | 0.32 |
| 2. BolC2p06934H | 0.32 | 0.00 | -0.00 | -0.00 | -0.00 |
| 3. NW_013617429.1_cds_XP_013613691.1_54684 | 0.32 | -0.00 | 0.00 | -0.00 | -0.00 |
| 4. NW_013617429.1_cds_XP_013613692.1_54685 | 0.32 | -0.00 | -0.00 | 0.00 | -0.00 |
| 5. NW_013617429.1_cds_XP_013613693.1_54686 | 0.32 | -0.00 | -0.00 | -0.00 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G19090.1 | orthology | 0.116 | 2 | 426 | 9.03e-143 |
| MELO3C021404.2.1 | orthology | 0.559 | 4 | - | - |
| brana_pan_p072847 | orthology | 0.001 | 1 | - | - |
| cucsa_pan_p012169 | orthology | 0.527 | 4 | - | - |