Gene braol_pan_p004888


Sequence ID braol_pan_p004888  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Core (3/3)
Length 371aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 371 amino acids

>braol_pan_p004888_BRAOL
MGQKKEETVTKPEGDKKPVDGGNNTVVVMKLDMHCEGCGKKIKRILKKHKGVEDVKIDYK
ADKLTVVGNVDPTAVRDKVAERMKRKVEIVSTVAPKKEAPPPSGGEKKVVEEKPAEKKPA
DEKPAGEKKVEMKKDEGEKKAPSPPAPPKESTVVLKTKLHCEGCEQKIKRIVNKIKGVKS
VAIDSTKDLVIVKGIIDVKQLTPYLNEKLKRTVEVVPPKKEEGATVAAAAAPAGGEKKDK
GVGEKKDGGGEKKKEVASAGGGDGGATLDVKKSEYSGYGYQPQPMYYNPPGQVYGQHYMM
QGQSSQSYVQEPYVNQGYVHESYMNQGYGQGYGQQAPPPPYMNHQGYADPYAHMRAPEMF
SDENPNGCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p004888



Represented sequence(s):
BRAOL_HDEM
BolC2p06094H
BRAOL_A2_v1.0
Bol005435
BRAOL_TO1000
NC_027749.1_cds_XP_013621628.1_5487
NC_027749.1_cds_XP_013621629.1_5486
Download sequences FASTA

  1. 2. 3. 4.
1. Bol005435 0.00 0.54 0.54 0.27
2. BolC2p06094H 0.54 0.00 -0.00 0.27
3. NC_027749.1_cds_XP_013621628.1_5487 0.54 -0.00 0.00 0.27
4. NC_027749.1_cds_XP_013621629.1_5486 0.27 0.27 0.27 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G03380.1 orthology 0.155 3 - -
brana_pan_p035365 orthology 0.0097 2 506 1.5e-180
brarr_pan_p012244 orthology 0.0094 1 499 6.45e-178