Gene braol_pan_p005703


Sequence ID braol_pan_p005703  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 178aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 178 amino acids

>braol_pan_p005703_BRAOL
MGLRSIISTITYGLFLGYPHKKPKVKSVSHLNYYHTMPKARPLSLQTIDLKVRMCCSGCE
RVVKHAIYKLRGVDSVEVNLELERVTVVGYVERKKVLKAVRRAGKRAEFWPYPDMPRYFT
SSDHYFKDTTREFRESYNYYRHGYNLSDRHGHIHVTNRGDDKVSNFFNDDNVHACRLM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p005703



Represented sequence(s):
BRAOL_HDEM
BolC6p37245H
BRAOL_TO1000
NC_027753.1_cds_XP_013590416.1_33180
Unrepresented genome(s):
BRAOL_A2_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT2G18196.1 orthology 0.0703 3 298 3.11e-105
brana_pan_p040174 orthology 0.0011 2 224 3.66e-76
brarr_pan_p015631 orthology 0 1 330 1.1e-117
cajca.ICPL87119.gnm1.ann1.C.cajan_07046.1 orthology 0.5 6 - -
cicar_pan_p015078 orthology 0.465 5 205 5.83e-69
medtr_pan_p021766 orthology 0.552 5 181 6.89e-59
phavu.G19833.gnm2.ann1.Phvul.007G117600.1 orthology 0.458 5 204 1.09e-67
soybn_pan_p021167 orthology 0.479 6 199 8.76e-66
soybn_pan_p023045 orthology 0.489 6 - -