Gene braol_pan_p008215


Sequence ID braol_pan_p008215  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 309aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 309 amino acids

>braol_pan_p008215_BRAOL
MLCASQASTRDICSTMEPSSATIRLGGRAIDRHNPIIRDGRRFTPPPSPNHNSSTSSASS
STYHTPLKTRLGLESSEQPRVAKRKSKKGQCNGGKSPIGCPNSDTPQSSSRYLLSNPVFF
DGFVDSDPIPLPIEPEITMCDELDKIHEDRLVINASKHLSSSSFLEKKQPDFVDGFLDYD
PVMSPDNPFSEPTKASPTASESSLADQDFSSPDLKFSPPQPPPPPPPPSPQPPEKSSSDQ
VVILRVSLHCKGCAGKVKKHLSKLKGVTSFKIDFAAKKVTVTGDVTPLTVLSTISKVKNA
QFWPEIIRK



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p008215



Represented sequence(s):
BRAOL_HDEM
Unrepresented genome(s):
BRAOL_A2_v1.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G02600.1 orthology 0.169 3 - -
brana_pan_p024734 orthology 0.0094 1 - -
brarr_pan_p015073 orthology 0.0298 2 486 4.28e-175