Gene braol_pan_p011410


Sequence ID braol_pan_p011410  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Core (3/3)
Length 109aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 109 amino acids

>braol_pan_p011410_BRAOL
MSEKRLCCAVMRINMDCNACCRKVRRILINMKEVETHVIEKKERKIIVCGQFRPSDIAVK
LQKKMKRRVEILEIEHLSGDHGGGEEEHYHEPQYEYPVQPDQVTTPLLC


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP109350 Unannotated cluster
3 GP119142 Unannotated cluster
4 GP077996 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR036163
Figure 1: IPR domains for braol_pan_p011410



Represented sequence(s):
BRAOL_TO1000
NC_027749.1_cds_XP_013619766.1_9834
BRAOL_HDEM
BolC2p11319H
BRAOL_A2_v1.0
Bol031049
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg7g014560.1 orthology 0.957 5 108 6.56e-31
Cm038010.1 orthology 0.957 6 108 1.16e-30
Cs7g13150.1 orthology 0.957 6 108 7.31e-31
FvH4_4g27630.1 orthology 1 4 103 1.97e-30
Manes.06G070100.1 orthology 0.819 2 - -
Manes.14G100500.1 orthology 0.741 2 114 1.29e-34
brana_pan_p052252 orthology 0.0016 1 204 4.21e-70
braol_pan_p053779 ultra-paralogy 0.0011 0 - -
maldo_pan_p037558 orthology 1 4 - -
maldo_pan_p044634 orthology 1 4 - -
maldo_pan_p046030 orthology 0.975 4 - -
maldo_pan_p049521 orthology 1 4 - -
maldo_pan_p049537 orthology 0.984 4 114 2e-34
maldo_pan_p055366 orthology 1 4 - -