Gene braol_pan_p013743
Sequence ID | braol_pan_p013743 add to my list | ||
---|---|---|---|
Species | Brassica oleracea | ||
Alias | No gene alias | ||
Pangenome status | Dispensable (2/3) | ||
Length | 348aa | ||
Gene Ontology |
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Length: 348 amino acids
>braol_pan_p013743_BRAOL MATGEMKPETKKTEQKQFPQVKDPTPPLALPYKTCNLKVSIHCEGCKRKVKKILTSIEGV YRVDIDVKQNNVTVMGIVSPEILLKKLHKAGKNADLVPEIPDPVENKPHDPKKKNKKKKE EKSEITDKVTSPGSDKPESEKPDGAGKCSSGDNSEACVPVKEDKCEILKKKDSAPADSSL PSLVDSPASTESPAPTAEKKAEESSGSVGKKKKKKGQSMSNVNNPTGGPARTRSLPSPTT TPASEDHDRSNNQHDGHQMLTNNITPRQDMYPYPPNYYAPQIMYGVSYNVAQPPVSVDAA SYYSPATPHSYAYMHPGYLPSDQNPYPSRPSDSFELFSDENPNGCSVM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP023608 | Unannotated cluster |
3 | GP040483 | Unannotated cluster |
4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for braol_pan_p013743
Represented sequence(s):
Unrepresented genome(s):
BRAOL_HDEM
BRAOL_TO1000
BRAOL_A2_v1.0
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT1G56210.1 | orthology | 0.288 | 2 | 362 | 1.45e-124 |
Ca_18_40.10 | orthology | 1 | 5 | - | - |
Ca_31_336.3 | orthology | 1 | 5 | - | - |
Cc02_g33120 | orthology | 1 | 5 | - | - |
brana_pan_p018109 | orthology | 0.0046 | 1 | 650 | 1.61e-238 |
maize_pan_p033245 | orthology | 1 | 4 | - | - |