Gene braol_pan_p025290
| Sequence ID | braol_pan_p025290 add to my list | ||
|---|---|---|---|
| Species | Brassica oleracea | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 332aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 332 amino acids
>braol_pan_p025290_BRAOL MLCASQASTRNICSTMDQPSQPSSSSPTVRLGGRAIDRHNPIIRDGRRFTPPPSPNHNSS SAPPSSSSTYHTPLKTRLGLESSETTRVSKRKSKKSQFDAGKSPISCFTSDTPQGSSRYL LSNPVFFDGFVDSDPIPLPIEPEITMDDDLDKNHEDTLVINASKHLSSSQSFLEKKQPGF FDGFLDYDPVMSPDNPFSEPTKDASSPDNPLSEPTKASPTASQSSLEDKDSSSPDFKFSP PQPPPPPPPPSPPPMENNSSSDQVVVLRVSLHCKGCAGKVKKHLSKLKGVTSFNIDFAAK KVTVTGDVTPLTVLASISKVKNAQVWPETIQK
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for braol_pan_p025290
Represented sequence(s):
BRAOL_A2_v1.0
BRAOL_HDEM
BRAOL_TO1000
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. Bol010100 | 0.00 | -0.00 | 0.32 | -0.00 | -0.00 | 0.32 |
| 2. BolC9p60136H | -0.00 | 0.00 | 0.30 | -0.00 | -0.00 | 0.30 |
| 3. NC_027756.1_cds_XP_013612490.1_54340 | 0.32 | 0.30 | 0.00 | 2.67 | 0.30 | -0.00 |
| 4. NC_027756.1_cds_XP_013612491.1_54339 | -0.00 | -0.00 | 2.67 | 0.00 | -0.00 | 0.30 |
| 5. NC_027756.1_cds_XP_013612492.1_54342 | -0.00 | -0.00 | 0.30 | -0.00 | 0.00 | 0.30 |
| 6. NC_027756.1_cds_XP_013612493.1_54341 | 0.32 | 0.30 | -0.00 | 0.30 | 0.30 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G02600.1 | orthology | 0.146 | 3 | 430 | 1.6e-152 |
| brana_pan_p018385 | orthology | 0.0049 | 1 | 508 | 5.34e-183 |
| brarr_pan_p030721 | orthology | 0.0475 | 2 | 441 | 2.83e-156 |