Gene braol_pan_p025375


Sequence ID braol_pan_p025375  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Core (3/3)
Length 140aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 140 amino acids

>braol_pan_p025375_BRAOL
MSMTVEIRVPNLDCEGCASKLKKTLLKLKGVEEVEVEMESQKVTARGYRLEEKKVLKAVR
RAGKAAEPWPYRLGNSHFASFYKYPSYVTNHYYSDAHRTDPTGGVHTFFHTPAVYSVAVA
GDEIAASMFSDDNPHACTIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p025375



Represented sequence(s):
BRAOL_HDEM
BRAOL_A2_v1.0
Bol037399



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G48970.1 orthology 0.0292 3 271 1.2e-95
AUR62015981-RA orthology 0.56 8 - -
Bv3_055490_mxet.t1 orthology 0.593 8 199 4.19e-67
Ca_8_1007.1 orthology 0.487 11 198 2.9e-66
Cc02_g02970 orthology 0.487 11 197 1.85e-66
Cg9g026790.1 orthology 0.313 7 208 1.05e-70
Cm028340.1 orthology 0.313 7 208 1.77e-70
Cs9g17280.1 orthology 0.313 7 208 1.14e-70
DCAR_009368 orthology 0.566 13 204 4.44e-69
FvH4_7g29520.1 orthology 0.353 8 206 9.29e-70
HanXRQChr06g0183831 orthology 0.569 8 196 1.17e-65
HanXRQChr09g0253621 orthology 0.596 8 - -
MELO3C003319.2.1 orthology 0.543 8 166 1.44e-53
Manes.14G025900.1 orthology 0.386 8 204 4.07e-69
Mba01_g04690.1 orthology 0.815 13 172 1.35e-56
Oeu024220.1 orthology 0.462 10 200 2.63e-67
PGSC0003DMP400025270 orthology 0.48 13 208 9.16e-71
Solyc03g025790.2.1 orthology 0.47 13 207 2.61e-70
brana_pan_p044950 orthology 0.001 2 276 1.62e-97
brarr_pan_p005835 orthology 0 1 280 5.92e-99
cajca.ICPL87119.gnm1.ann1.C.cajan_41314.1 orthology 0.294 7 214 4.26e-73
capan_pan_p012989 orthology 0.493 12 204 3.25e-69
cucsa_pan_p007884 orthology 0.51 8 172 4.04e-56
evm_27.model.AmTr_v1.0_scaffold00076.26 orthology 0.779 11 166 2.3e-54
ipotf_pan_p019855 orthology 0.492 12 192 2.38e-64
ipotf_pan_p021461 orthology 0.664 12 - -
itb03g13280.t1 orthology 0.492 12 192 2.57e-64
itb12g25750.t1 orthology 0.651 12 - -
maldo_pan_p005834 orthology 0.359 8 206 7.49e-70
maldo_pan_p046866 orthology 0.784 8 - -
medtr_pan_p031372 orthology 0.277 5 229 9.07e-79
musac_pan_p029616 orthology 0.802 13 173 1.05e-56
phavu.G19833.gnm2.ann1.Phvul.004G116300.1 orthology 0.292 7 220 2.27e-75
soybn_pan_p030070 orthology 0.268 6 185 1.28e-61
thecc_pan_p002573 orthology 0.333 8 210 1.93e-71
vitvi_pan_p028565 orthology 0.405 7 195 1.87e-65