Gene braol_pan_p034967


Sequence ID braol_pan_p034967  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 476aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 476 amino acids

>braol_pan_p034967_BRAOL
MSKEEFMNIQTCVLKVNIHCEGCKQKVKKILHKIEGVFTTKIDADQGKVTVSVSGSVDPS
VLIEKLAKSGKHAEVWGAPKGNNNPNQSHDSHLVNQLKGRQIDNKKGSGGKNNNNDKCPK
NVGSGGGGSNPHQIQKMKGFQDMKLPQQLKDLNGSVPENKNQKQPGAKFNVPEEEEDDYF
SDDDDEFTDTGDEDSDDDEFDDLPSPSNKMMMPNNQQMMMNANLGGGSTKNGGKGVYGGG
KGEPNGGGGGKGDSGGAGNQNQGGGKNGGQNANGGRHPQDGKNGGGPNAGKKVNGGGGGL
PAGFLPMGGGVPPNMSMPIGGLMGMGMGDPMGNIPAALCPMGGAGPSNMTMPIGGLMGMG
GLMGNIPAVHGLPATGASGIPPGYFQRAGPDPIQMQHQQQQQQYLAAVMNQQRAMENERF
QPMMYARPPLAVNYMPPHIHLHQYPNPYDPYPYPPHGNDQYSHVSNEENTSSCDIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p034967



Represented sequence(s):
BRAOL_TO1000
NC_027750.1_cds_XP_013623636.1_14993
BRAOL_HDEM
BolC3p16481H
Unrepresented genome(s):
BRAOL_A2_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G06130.1 orthology 0.269 3 - -
MELO3C021404.2.1 orthology 0.694 5 - -
brana_pan_p014467 orthology 0.0128 1 - -
brarr_pan_p004859 orthology 0.0351 2 589 3.41e-210
cucsa_pan_p012169 orthology 0.662 5 - -