Gene braol_pan_p037483


Sequence ID braol_pan_p037483  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Core (3/3)
Length 265aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 265 amino acids

>braol_pan_p037483_BRAOL
MRISDIFCSSPASTAVRRSTLPHDGEITGGRRSVDSLRRSQNPNNNRDKTAPCFASEMPF
IPIPRPVMSCRNSFESSRGRKITTAHGGEVQTRRKSSADVSDVLRRTKSSLQGSSSSRYL
LKDYKSYKEDDKDFWLSSSDRSKDLIPFRARNVTISSSSTSSSSSSSVTNGSSPSPSTDD
DQVVVLWVSIHCKGCEGKVRKHISKMEGVTSYTIDIATKKVTVVGKVTPSGVVESISKVK
FAQLWPSSSSPSFPHVPNHSPLIKS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily
SODIUM POTASSIUM ROOT DEFECTIVE 2/3
IPR016578 		SODIUM POTASSIUM ROOT DEFECTIVE 2/3 Family

IPR006121 IPR036163 IPR016578
Figure 1: IPR domains for braol_pan_p037483



Represented sequence(s):
BRAOL_HDEM
BolC4p27309H
BolC4p27306H
BRAOL_A2_v1.0
Bol033232
BRAOL_TO1000
NC_027751.1_cds_XP_013633992.1_24093
Download sequences FASTA

  1. 2. 3. 4.
1. Bol033232 0.00 -0.00 2.36 0.38
2. BolC4p27309H -0.00 0.00 2.36 0.38
3. BolC4p27306H 2.36 2.36 0.00 2.76
4. NC_027751.1_cds_XP_013633992.1_24093 0.38 0.38 2.76 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT2G28660.1 orthology 0.167 2 322 9.75e-112
brana_pan_p001233 orthology 0.0252 2 440 5.2e-158
brarr_pan_p013848 orthology 0.0167 2 445 3.09e-160