Gene braol_pan_p039277


Sequence ID braol_pan_p039277  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Core (3/3)
Length 121aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 121 amino acids

>braol_pan_p039277_BRAOL
MDCEGCERRVRKSVQGMKGVTKVTVDPKQSKLTVEGFVQPNKVVRRVMHRTGKKAELWPY
VPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVAPLARASSFEVKYTSAFSDDNPNACTI
M


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p039277



Represented sequence(s):
BRAOL_TO1000
NC_027750.1_cds_XP_013627235.1_16398
BRAOL_A2_v1.0
Bol023860
BRAOL_HDEM
BolC3p18074H
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G66110.1 orthology 0.0385 2 243 9.48e-85
Cg1g001350.1 orthology 0.441 9 - -
Cm173610.1 orthology 0.434 8 - -
Cm280940.1 orthology 0.434 8 - -
Cs1g25820.1 orthology 0.434 9 - -
MELO3C007926.2.1 orthology 0.322 4 - -
Manes.01G148900.1 orthology 0.383 4 - -
brana_pan_p030902 orthology 0.0092 2 248 1.15e-86
brarr_pan_p021369 orthology 0.0092 2 248 9.31e-87
cucsa_pan_p018650 orthology 0.323 4 - -
maldo_pan_p003753 orthology 0.375 6 206 4.17e-70
medtr_pan_p005386 orthology 0.518 8 206 1.02e-69
thecc_pan_p011891 orthology 0.447 8 - -