Gene brarr_pan_p012762
Sequence ID | brarr_pan_p012762 add to my list | ||
---|---|---|---|
Species | Brassica rapa subsp. rapa | ||
Alias | No gene alias | ||
Pangenome status | Core (2/2) | ||
Length | 271aa | ||
Gene Ontology |
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Length: 271 amino acids
>brarr_pan_p012762_BRARR MGEKEEKKEKGEEIITAVYKVHLHCGKCACDIKKPLLRFQGVHGVDVDLEKNEIKVKGKI EVVKIHKQIEKWSKKKVELISPKPSEVKKTTTTTTTTTSVVEKKTTEVKKDVIRTTVLKV HIHCAKCDKDLQNKLLKHKAIHIVKTDTKAQTLTVQGTIESAKLLTYIRKKVHKHAEIVS SKTEEEKKKEEEEKKKKKEEEEKKKKEEEEQKKKGEVKVEVTKTTTQIVEFKEKVKVEGQ KDKDGNIPYFVHYVYAPQLFSDENPNACCIV
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
3 | GP342504 | Unannotated cluster |
4 | GP464372 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p012762
Represented sequence(s):
BRARR_v3.0
BRARR_Z1
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT1G29000.1 | orthology | 0.0828 | 2 | 372 | 3.19e-131 |
brana_pan_p004936 | orthology | 0 | 1 | 431 | 2.61e-154 |