Gene brarr_pan_p015545


Sequence ID brarr_pan_p015545  add to my list
Species Brassica rapa subsp. rapa
Alias No gene alias
Pangenome status Core (2/2)
Length 266aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 266 amino acids

>brarr_pan_p015545_BRARR
MGKNKQNGEADNKSRNQKNGDSNKSDTKNQKNGDADKSDKSDKKNQCKEIVLKVYMHCEG
CASQVSHCLRGYDGVEQIKTEVGENKVVVSGKFDDPVKILRRVQKKFSKNAELISPKPNP
NQDQKKEQQQKKESTPQIKTAILKMNIHCEGCVNEIKRGIEKIKGIQTAEPDRSKSMVVV
RGVMDPPKLVEEIKKKLKRHAELVSQNTEKGKGNNDKESNNNNKGNKKNEDSDGNTIFSY
PPQYSAQHNYPSQIFSDENVHSCSIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545
Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brarr_pan_p015545



Represented sequence(s):
BRARR_Z1
BRARR_v3.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G02960.1 orthology 0.158 1 356 2.18e-125
Cg7g016680.1 orthology 1 6 181 1.99e-57
Cm174370.1 orthology 1 5 184 2.94e-58
Cs7g11080.1 orthology 1 6 195 3.49e-62
Manes.13G008700.1 orthology 0.971 4 202 2.02e-65
orange1.1t05450.1 orthology 1 6 - -
thecc_pan_p009145 orthology 0.905 3 221 3.44e-72
thecc_pan_p020513 orthology 1 3 - -