Gene brarr_pan_p018750
Sequence ID | brarr_pan_p018750 add to my list | ||
---|---|---|---|
Species | Brassica rapa subsp. rapa | ||
Alias | No gene alias | ||
Pangenome status | Core (2/2) | ||
Length | 158aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 158 amino acids
>brarr_pan_p018750_BRARR MLDWIHGHSRFPLALSVVELLVDMDCQGCETKVRRAISKLSGVNTVEIDVDRQKVTVTGY IDREEVLRIVKRTGRAAEFWPFPYNGYYGGYYTYPSQYLEQSNQKINNHGENTISYGGNY NFYEDSSINGYYPRSPQKVDENDIHLFSDDNVHACLVM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | Heavy metal transport/detoxification group1
GP015397 |
Heavy metal transport/detoxification group1 |
3 | GP040065 | Unannotated cluster |
4 | GP078604 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Heavy-metal-associated, conserved site
IPR017969
|
Heavy-metal-associated, conserved site | Conserved_site |
Figure 1: IPR domains for brarr_pan_p018750
Represented sequence(s):
BRARR_v3.0
BRARR_Z1
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT3G56891.1 | orthology | 0.244 | 1 | - | - |
Ca_28_123.1 | orthology | 1 | 6 | - | - |
Ca_31_155.3 | orthology | 1 | 6 | - | - |
Ca_64_676.1 | orthology | 1 | 6 | - | - |
Ca_78_1273.1 | orthology | 1 | 6 | - | - |
Cc06_g21060 | orthology | 0.993 | 6 | - | - |
Cg6g011520.1 | orthology | 0.91 | 8 | 155 | 2.15e-49 |
Cs6g10930.1 | orthology | 0.904 | 8 | 149 | 5.65e-47 |
DCAR_016949 | orthology | 1 | 6 | - | - |
FvH4_2g26780.1 | orthology | 0.911 | 6 | - | - |
MELO3C019416.2.1 | orthology | 0.99 | 8 | 129 | 5.44e-39 |
Manes.08G099200.1 | orthology | 0.858 | 4 | - | - |
Oeu053981.1 | orthology | 1 | 7 | 105 | 7.77e-30 |
cajca.ICPL87119.gnm1.ann1.C.cajan_46944.1 | orthology | 1 | 10 | 137 | 2.11e-42 |
cucsa_pan_p011351 | orthology | 1 | 8 | 128 | 7.47e-39 |
ipotf_pan_p003030 | orthology | 1 | 8 | 140 | 2.01e-43 |
itb11g01700.t1 | orthology | 1 | 8 | 140 | 2.17e-43 |
maldo_pan_p024328 | orthology | 0.995 | 6 | - | - |
maldo_pan_p038662 | orthology | 0.902 | 6 | - | - |
medtr_pan_p030129 | orthology | 0.998 | 8 | 100 | 5.8e-28 |
phavu.G19833.gnm2.ann1.Phvul.004G052700.1 | orthology | 1 | 9 | 145 | 1.35e-45 |
soybn_pan_p020075 | orthology | 1 | 10 | - | - |
thecc_pan_p019791 | orthology | 0.864 | 7 | 133 | 1.34e-40 |
vitvi_pan_p003255 | orthology | 0.85 | 4 | - | - |