Gene brarr_pan_p021889


Sequence ID brarr_pan_p021889  add to my list
Species Brassica rapa subsp. rapa
Alias No gene alias
Pangenome status Core (2/2)
Length 555aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 555 amino acids

>brarr_pan_p021889_BRARR
MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAEQGKVTVSGNVEPSVL
IKKLLKSGKHAEIWGAPKANNTNQNQPNLANQLKGMQIDHGGKGGGGGGGGNNNKGQKGG
GGGGGGGGGGGGGGGGPPKMILPQLTPQQMQQLNPQQLQQLQQLQQMKAFQDLKLPPPQL
KGPGPGSVPMNKNPQSPNQKAVKFDVPEDDDDDFSDDDEFDDDEFDDDDELDDDEFDDHP
PPNKMKPMMGGGGGNMMMPNAQNNGGGGPGPAGGKIVGKGGPGGVPFPVQMPGGGGGNGG
MKGGPPGGGGGGNVGNPNQGGGKNGGKNGGGPPLDVKNGGGGGGPNGNNKGGGQMIGGPN
GGKKGGAGGGGGGGGGGGPMGGGLPPGFRPLGGGNGGPQTMNMPMGGPMGSLPSMGGGPG
PMGNNMQAVQGLPAMGPGGGGGGSAAGAPPGYFQGHAGSGGGQDSMPGNPYLQQQQQQQQ
QQYLAAVMNQQRAMGNERFQPMMYARPPPEVNYLPPQPHQQHPYPYPYPYPYPPHGGDQY
SNYFNDENTSSCNIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brarr_pan_p021889



Represented sequence(s):
BRARR_v3.0
BraA10g021150.3C
BRARR_Z1
BraA10t44122Z
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G19090.1 orthology 0.104 2 - -
MELO3C021404.2.1 orthology 0.546 4 - -
brana_pan_p035280 orthology 0.0037 1 504 1.9e-174
cucsa_pan_p012169 orthology 0.514 4 - -