Gene brarr_pan_p028538
| Sequence ID | brarr_pan_p028538 add to my list | ||
|---|---|---|---|
| Species | Brassica rapa subsp. rapa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 483aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 483 amino acids
>brarr_pan_p028538_BRARR MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDSDQGKVTVSGSVDPSVL IKKLAKSGKHAEIWGAPKGNNNNQNQLANQMKGMQIDNGKGVGGKNNNNNNKGPKNGGGG GGGGGGGGGGGGGGGGNSNAPKMGQQLNPQQIQQLQQIQKMKGFQDLKLPPQLKDSKGSA PPPNKNQKGVKFDVPEDDDDDDFTDDDEFDDEFTDDDDEFDDDEFGDLPPPSNKMKPNMM MPNAQQMMMNAQKNANLGGKGGPSVGNGGGGGGKGGPGGGGGGKGAPGGGGNQNQGGGKN GGKNGGGGQPQDGGKNGGGPNAGKKGNGGGGGGGGPMAGGLPAGFRPMGGGGPQNMSMPM GGPMGMGGPMGSIPAVQGLPATGPGGGVPPGYFQGAGPDPMQMQQQQQQQQYLAAVMNQQ RAIGNERFQPMMYARPPPAVNYMPAHPHQYPNPYPYPYPYPPHGNDQYSHVFSDENTSSC DIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p028538
Represented sequence(s):
BRARR_Z1
BRARR_v3.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT3G06130.1 | orthology | 0.103 | 2 | 447 | 1.27e-154 |
| MELO3C021404.2.1 | orthology | 0.528 | 4 | - | - |
| brana_pan_p057676 | orthology | 0.295 | 1 | - | - |
| brana_pan_p070531 | orthology | 0.333 | 1 | - | - |
| cucsa_pan_p012169 | orthology | 0.496 | 4 | 204 | 1.38e-59 |