Gene brarr_pan_p028770
| Sequence ID | brarr_pan_p028770 add to my list | ||
|---|---|---|---|
| Species | Brassica rapa subsp. rapa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 271aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 271 amino acids
>brarr_pan_p028770_BRARR MHCEGCARKVRRCLKGFEGVEDVMTDCKTGKVVVKGEKADPLKVLARVQRKTHRQVVLVS PIPPPSQPAEKKAEEEKPKVEEKKVEPPVVVTVVLKVHMHCEACASEIKKRIMRMKGVES AESDLKGSQVTVKGVFEPQKLVEHIYKRTGKHAAIMKIDPPPPPPPEEAAAAAEADKKEE GKGDKGGGESKGEEGKDEKKEGEGEAAENKNGGGGGEEEGKVVDVRKIENPYYYYYNYQL PRVAVPPMEMPPHAYPPQLFSDENPNSCSIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP070448 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p028770
Represented sequence(s):
BRARR_Z1
BRARR_v3.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G63530.1 | orthology | 0.0967 | 2 | 305 | 1.16e-103 |
| brana_pan_p044785 | orthology | 0.0021 | 1 | 395 | 2.77e-139 |