Gene brarr_pan_p039884


Sequence ID brarr_pan_p039884  add to my list
Species Brassica rapa subsp. rapa
Alias No gene alias
Pangenome status Dispensable (1/2)
Length 256aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 256 amino acids

>brarr_pan_p039884_BRARR
MKGTMFCASQASTATANHNERSIMARAIDRHNPIIKDGRRSFTAPCSSGDDYIAPYRQLS
KITRIPSSPSPSGDGKMIQVDKGRKSTSGSLLKLVSSDNISLARKSIGCFDVTKSTPPGS
TRYLLGTDPASLSGSTGKDMVVSEEGEPSEARRGSGAAVEEKKTASSGSDQQASKQVVVL
RVSLHCQCRGCVGKVKKHLSRMQGVTSFNIDFASKKVTVTGDITPLQVLGCLSKVKNAQF
WTPPPPSSLSSANPEN





Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily
SODIUM POTASSIUM ROOT DEFECTIVE 2/3
IPR016578
SODIUM POTASSIUM ROOT DEFECTIVE 2/3 Family

IPR006121 IPR036163 IPR016578
Figure 1: IPR domains for brarr_pan_p039884



Represented sequence(s):
BRARR_Z1
Unrepresented genome(s):
BRARR_v3.0


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G53530.2 orthology 0.217 2 358 1.36e-126
MELO3C003095.2.1 orthology 1 4 - -
brana_pan_p041953 orthology 0.0011 1 493 3.33e-179
cajca.ICPL87119.gnm1.ann1.C.cajan_09762.1 orthology 1 5 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_37472.1 orthology 1 6 - -
cicar_pan_p008704 orthology 1 5 - -
cicar_pan_p017889 orthology 1 5 - -
cucsa_pan_p020833 orthology 1 4 - -
medtr_pan_p001385 orthology 1 5 - -
medtr_pan_p025678 orthology 1 5 - -
phavu.G19833.gnm2.ann1.Phvul.001G171400.1 orthology 1 6 - -
phavu.G19833.gnm2.ann1.Phvul.L001741.1 orthology 1 6 - -
soybn_pan_p015281 orthology 1 6 - -
soybn_pan_p025035 orthology 1 6 - -
soybn_pan_p025142 orthology 1 5 - -