Gene capan_pan_p012490


Sequence ID capan_pan_p012490  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 309aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 309 amino acids

>capan_pan_p012490_CAPAN
MARRFSTFALKLKVHCKYCARELEKELQSIKGVRSVTIDEELGKVVISGKIDPAKLLRKF
RKDGRDAEFWGEQEEPHKDTNALSEVTDPLNDPDIKAQLEKCTDNSSVKSVEVTKSVKVT
YEGDSRNGPSEKIVEINNTTKNVKKPHDHYDHSHCGGGELCGASSSCCGGHPAISHNPNH
GCCQCGNTTSLGPCCAHGRNSCYYHSQYGNNTSCGLCCAHRRNSCYNHYSQYGNTGYGSY
YANSISPSAPPLPSDYYRAPPPSAVPDDYYQAPSSPQSSRYYYQAPPSLGIPHPYYSFLN
EKVNGCIII


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP243330 Unannotated cluster
3 GP349835 Unannotated cluster
4 GP490155 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p012490



Represented sequence(s):
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang03g001507
CAPAN_Zunla_1_v2.0
Capana00g003763
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold449.34
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
PGSC0003DMP400014809 orthology 0.231 2 323 7.39e-110
Solyc05g054250.1.1 orthology 0.274 2 314 3.86e-107