Gene capan_pan_p015895


Sequence ID capan_pan_p015895  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 147aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 147 amino acids

>capan_pan_p015895_CAPAN
SCILKVDVHCDACKMKLVDVLSSVCGVYALTINAEKGEVNVCGEVNPNLLVKALKETGKH
AEIVHVKLKHPSLTTPTSRYLPYNGYGYGHGHGHGPGHGYCYGHGYGYDYGHGYGQTMPM
SSYNYSMRRPLMMEQPHYYGHVSSHPR



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP241299 Unannotated cluster
3 GP128139 Unannotated cluster
4 GP139101 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p015895



Represented sequence(s):
CAPAN_Glabriusculum_Chiltepin_v2.0
CAPAN_Zunla_1_v2.0
CAPAN_CM334_v2.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Solyc09g064730.2.1 orthology 0.191 1 194 1.36e-64
ipotf_pan_p031383 orthology 1 3 - -
medtr_pan_p032119 orthology 1 2 - -