Gene capan_pan_p017109


Sequence ID capan_pan_p017109  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 258aa



Length: 258 amino acids

>capan_pan_p017109_CAPAN
MMVEDELAMIDPENEDFDPETESEEDEEEQQVVKLAEPSKTAVYNRDGLLERLADISWPD
DLDWTHRLNIDREEQEEVDVNDDLAREHSFYTQGLEGIRQAYANFHSTGEPFLRPSDYYA
EMVKSDVHMEKVKSRLLAEKKRIEESEERRKARENKKLAKEVQAQKMKERTKQKKQEIES
VKKWRKQRQQSGFDKEDASGLDLAFDGGDANKPFQRSNKKRLVCKVLKVTLSHHWNSGLQ
LAKKKPEGNRQPPAIIGL


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Unknown function duf1138 family
GP002478		 Unknown function duf1138 family
2 GP018276 Unannotated cluster
3 GP042981 Unannotated cluster
4 GP075980 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Eukaryotic rRNA processing
IPR008610 		Eukaryotic rRNA processing Family

IPR008610
Figure 1: IPR domains for capan_pan_p017109



Represented sequence(s):
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold140.50
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang04g000769
CAPAN_Zunla_1_v2.0
Capana01g001642
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G22660.1 orthology 0.684 4 179 1.64e-55
PGSC0003DMP400055292 orthology 0.204 2 - -
PGSC0003DMP400055391 orthology 0.188 2 305 6.81e-105
Solyc01g006090.2.1 orthology 0.202 2 - -
Solyc01g006170.2.1 orthology 0.186 1 302 1e-103
brana_pan_p006433 orthology 0.666 5 - -
brana_pan_p007884 orthology 0.665 6 - -
brana_pan_p012403 orthology 0.659 5 184 3.54e-57
brana_pan_p034179 orthology 0.647 5 - -
braol_pan_p022657 orthology 0.645 5 - -
braol_pan_p024061 orthology 0.707 6 176 7.07e-54
braol_pan_p030426 orthology 0.666 5 - -
brarr_pan_p009571 orthology 0.648 5 - -
brarr_pan_p026538 orthology 0.654 4 184 6e-57
brarr_pan_p031703 orthology 0.653 5 - -
ipotf_pan_p017885 orthology 0.544 3 175 1.32e-53
ipotf_pan_p024335 orthology 0.819 2 - -
ipotf_pan_p027028 orthology 0.587 2 - -
itb11g17740.t1 orthology 0.537 2 - -
itb12g07110.t1 orthology 0.542 3 175 1.42e-53