Gene capan_pan_p020108


Sequence ID capan_pan_p020108  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 154aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 154 amino acids

>capan_pan_p020108_CAPAN
MGLRGTLEYISDMMRSSTHKSNRKKRLFHTVELKVRMDCDGCELKVKKALSSLSGVKSVE
INRKQQKVTVTGYVEANKVLKKAKSTGKKAEIWPYVPYNLVAQPYAAAAYDKKAPPGYVR
RVDQNPTIGTVSRFEDNAYVTIFSDDNPNACSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p020108



Represented sequence(s):
CAPAN_Zunla_1_v2.0
Capana05g001880
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold1594.4
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang05g001470
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
PGSC0003DMP400037825 orthology 0.151 2 258 5.82e-90
Solyc05g051820.2.1 orthology 0.144 2 263 6.05e-92
ipotf_pan_p006080 orthology 0.194 3 236 2.75e-81
itb12g00660.t1 orthology 0.181 3 239 1.8e-82