Gene capan_pan_p022960


Sequence ID capan_pan_p022960  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 222aa



Length: 222 amino acids

>capan_pan_p022960_CAPAN
MATKYIVGSVLASFAVAYAFDVVIADKKVFGGNTPHTVANNEWWKETDKKFQAWPRTAGP
PVMSKSGTLDLATGVGGKIEKKQVLSAVENGTYVTGINNNEYQVTRGKELNRIAGVDYTC
SYVKIIWDKDIAIDSPLPWYLPLDKSHFSLSNIRVTALGRFFTRNMVKFLERVGLAPEGS
QKVQAILEQAADALVEGGKEGIFTPMYFFLARKPSVTDDLPT


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Unknown function duf1138 family
GP002478		 Unknown function duf1138 family
2 GP018276 Unannotated cluster
3 GP042981 Unannotated cluster
4 GP072479 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Sterol methyltransferase C-terminal
IPR013705 		Sterol methyltransferase C-terminal Domain
SAM-dependent methyltransferase SMT-type
IPR030384 		SAM-dependent methyltransferase SMT-type Domain
Protein of unknown function DUF1138
IPR009515 		Protein of unknown function DUF1138 Family

IPR013705 IPR030384 IPR009515
Figure 1: IPR domains for capan_pan_p022960



Represented sequence(s):
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang10g001980
CAPAN_Zunla_1_v2.0
Capana10g002231
Unrepresented genome(s):
CAPAN_CM334_v2.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA02G0204300.1 orthology 0.642 4 - -
ORGLA04G0145400.1 orthology 0.792 4 - -
PGSC0003DMP400040975 orthology 0.297 3 - -
Solyc10g080190.1.1 orthology 0.248 2 - -
Sspon.04G0008560-1A orthology 0.537 3 - -
Sspon.04G0008560-2D orthology 0.551 4 - -
capan_pan_p035797 ultra-paralogy 0.194 0 - -
orysa_pan_p007341 orthology 0.642 4 - -
orysa_pan_p033623 orthology 0.775 4 - -
sorbi_pan_p029054 orthology 0.578 4 - -