Gene cicar_pan_p019499


Sequence ID cicar_pan_p019499  add to my list
Species Cicer arietinum
Alias No gene alias
Pangenome status Core (2/2)
Length 287aa



Length: 287 amino acids

>cicar_pan_p019499_CICAR
MELPMVNVDTMKDDETEYLSEEISPSESGSDEDVKLSEPSKKAVNNRDALLDKLGDISWP
ENVEWRHKLSIDIDQEQEVDVNDDLARELAFYTQALEGTRQAFEKLQSMGLPFLRPSDYY
AEMVKADSHMEKVKGRLLDEKRKMEEAEERRKAREAKRLSKEIQAQKMKERAKQKKEDIE
SVKKWRKQRQQSGFADNGNDAGKVLDFEDGKVFERSKKKRPGVSPGDRSGGKAKQAFGKG
KKQMKRDSKFGFGGKKGLKKQNTADTTNDFGGFSKKGADAGNKKRKR



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Unknown function duf1138 family
GP002478
Unknown function duf1138 family
2 GP018276 Unannotated cluster
3 GP042981 Unannotated cluster
4 GP075980 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Eukaryotic rRNA processing
IPR008610
Eukaryotic rRNA processing Family

IPR008610
Figure 1: IPR domains for cicar_pan_p019499




  1. 2. 3. 4. 5.
1. cicar.CDCFrontier.gnm1.ann1.Ca_07244.1 0.00 0.35 0.70 0.35 1.69
2. cicar.CDCFrontier.gnm1.ann1.Ca_26568.1 0.35 0.00 0.35 -0.00 1.69
3. cicar.ICC4958.gnm2.ann1.Ca_26047.1 0.70 0.35 0.00 0.35 1.12
4. cicar.ICC4958.gnm2.ann1.Ca_24097.1 0.35 -0.00 0.35 0.00 1.70
5. cicar.ICC4958.gnm2.ann1.Ca_26276.1 1.69 1.69 1.12 1.70 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
cicar_pan_p021240 ultra-paralogy 0.0509 0 - -
vitvi_pan_p006372 orthology 0.41 1 264 6.09e-88