Gene cicar_pan_p019499
| Sequence ID | cicar_pan_p019499 add to my list |
|---|---|
| Species | Cicer arietinum |
| Alias | No gene alias |
| Pangenome status | Core (2/2) |
| Length | 287aa |
Length: 287 amino acids
>cicar_pan_p019499_CICAR MELPMVNVDTMKDDETEYLSEEISPSESGSDEDVKLSEPSKKAVNNRDALLDKLGDISWP ENVEWRHKLSIDIDQEQEVDVNDDLARELAFYTQALEGTRQAFEKLQSMGLPFLRPSDYY AEMVKADSHMEKVKGRLLDEKRKMEEAEERRKAREAKRLSKEIQAQKMKERAKQKKEDIE SVKKWRKQRQQSGFADNGNDAGKVLDFEDGKVFERSKKKRPGVSPGDRSGGKAKQAFGKG KKQMKRDSKFGFGGKKGLKKQNTADTTNDFGGFSKKGADAGNKKRKR
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
| 2 | GP018276 | Unannotated cluster |
| 3 | GP042981 | Unannotated cluster |
| 4 | GP075980 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Eukaryotic rRNA processing
IPR008610
|
Eukaryotic rRNA processing | Family |
Figure 1: IPR domains for cicar_pan_p019499
Represented sequence(s):
CICAR_ICC_4958_desi
CICAR_CDC_Frontier_kabuli
| 1. | 2. | 3. | 4. | 5. | |
|---|---|---|---|---|---|
| 1. cicar.CDCFrontier.gnm1.ann1.Ca_07244.1 | 0.00 | 0.35 | 0.70 | 0.35 | 1.69 |
| 2. cicar.CDCFrontier.gnm1.ann1.Ca_26568.1 | 0.35 | 0.00 | 0.35 | -0.00 | 1.69 |
| 3. cicar.ICC4958.gnm2.ann1.Ca_26047.1 | 0.70 | 0.35 | 0.00 | 0.35 | 1.12 |
| 4. cicar.ICC4958.gnm2.ann1.Ca_24097.1 | 0.35 | -0.00 | 0.35 | 0.00 | 1.70 |
| 5. cicar.ICC4958.gnm2.ann1.Ca_26276.1 | 1.69 | 1.69 | 1.12 | 1.70 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| cicar_pan_p021240 | ultra-paralogy | 0.0509 | 0 | - | - |
| vitvi_pan_p006372 | orthology | 0.41 | 1 | 264 | 6.09e-88 |