Gene cocnu_pan_p000446
| Sequence ID | cocnu_pan_p000446 add to my list | ||
|---|---|---|---|
| Species | Cocos nucifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 173aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 173 amino acids
>cocnu_pan_p000446_COCNU MDSNESSVKKCKHGVSTVVLKTRLHCDDCIQRMRRMICELKGVRRVTVDAQEGLVTVRGT MDAEKLPKVLEQKLNQEVELVPLKKDDGGEKKDKGGEKKDKGGDKKDEGGDKKDEDGKKE TVAGDGVGGGGKDDGGKAEANPTEYYGGYTYRIEMVHAPQLFSDENPNGCSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP342504 | Unannotated cluster |
| 4 | GP464372 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cocnu_pan_p000446
Represented sequence(s):
| 1. | 2. | 3. | |
|---|---|---|---|
| 1. COCNU_HT001RO02_U02PF23390.1 | 0.00 | -0.00 | -0.00 |
| 2. COCNU_HT001RO02_U02PF23390.2 | -0.00 | 0.00 | -0.00 |
| 3. Cnu_06781-RA | -0.00 | -0.00 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Mba01_g27600.1 | orthology | 0.708 | 2 | - | - |
| Mba01_g27610.1 | orthology | 1 | 3 | - | - |
| XP_010940639.1 | orthology | 0.306 | 1 | - | - |
| XP_010940640.1 | orthology | 0.306 | 1 | - | - |
| musac_pan_p011710 | orthology | 0.735 | 3 | - | - |