Gene cocnu_pan_p016328
| Sequence ID | cocnu_pan_p016328 add to my list | ||
|---|---|---|---|
| Species | Cocos nucifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 294aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 294 amino acids
>cocnu_pan_p016328_COCNU MAPLLFKEMKGVNFSCASPASAAVCTSIDRRSMVRPCTGRALDRHSPHIRDSRRAKAITN PMSQAPSKPNSYTQKSRKRSDKQVELISPADSSRYLLNDAPYFDVLPDLEEPLPPLLPPE PARPQTSKGDDPRLPFSRRDDSAVLRPSSLKAFDSAFVRPSSFKGDDSAALKPSSFKGDG SAVFRLSSFRGDDSDASRSSAFEEDDDSAVVRPSPTGPKDQVVVLRVSLHCKGCEGKVRK HISKMAGVTSFNIDFATKKVTVIGDVTPLGVLNSISKVKNAQFWPSPPTSSSSS
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cocnu_pan_p016328
Represented sequence(s):
| 1. | 2. | 3. | |
|---|---|---|---|
| 1. COCNU_HT001RO02_04PF02530.2 | 0.00 | 1.21 | -0.00 |
| 2. COCNU_HT001RO02_04PF02530.1 | 1.21 | 0.00 | 1.21 |
| 3. Cnu_08617-RA | -0.00 | 1.21 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| XP_010922428.1 | orthology | 0.0706 | 1 | 403 | 1.15e-142 |