Gene cocnu_pan_p018242
| Sequence ID | cocnu_pan_p018242 add to my list | ||
|---|---|---|---|
| Species | Cocos nucifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 329aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 329 amino acids
>cocnu_pan_p018242_COCNU MGDTKQEEAKEQAKPKEEEEEKKEEKQEEKKEEAKPSPPPPVVLFVELHCVGCAKKIERS IRKCRGVEGVEVDMMRNQVTVRGMVDPPALCSRVQKKTLRRVEVLSPPPPIEGEPKSEVV PSQRVSEITTIELQVNMHCEACAEQLRRKILKMRGVQTAETELRTRKVTVTGTMNGEKLA EYIYRRTGKLAKIVPQPPKEEEKKGESEKKAEETPPEEEEEKKEENGEKKEEEKAPQQEN AEGNSNGGGEEEKGGGEEQKKEGEGQTNADIPNEGDMVKRMVFWNGSIISEEEMANGRMM HWMPVYVIERPPPPLQIFSDENPNACCIS
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP126431 | Unannotated cluster |
| 4 | GP077890 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cocnu_pan_p018242
Represented sequence(s):
COCNU_CATD
COCNU_C3B02_v2.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Mba04_g24040.1 | orthology | 0.505 | 3 | - | - |
| Mba05_g07700.1 | orthology | 0.502 | 3 | - | - |
| Mba05_g22300.1 | orthology | 0.451 | 3 | - | - |
| XP_010911103.1 | orthology | 0.229 | 1 | - | - |
| XP_010919013.1 | orthology | 0.113 | 1 | - | - |
| musac_pan_p012393 | orthology | 0.379 | 3 | - | - |
| musac_pan_p028148 | orthology | 0.448 | 3 | - | - |
| musac_pan_p044150 | orthology | 0.685 | 3 | - | - |