Gene cocnu_pan_p026158


Sequence ID cocnu_pan_p026158  add to my list
Species Cocos nucifera
Alias No gene alias
Pangenome status Dispensable (1/2)
Length 248aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 248 amino acids

>cocnu_pan_p026158_COCNU
MTKHEDFKLLKIQEVKKLLQRIEGVYTVSIDAEQQKVTVSGNVDSKTLIKKLAKSGKHAE
LWTQKPNNQSHKPNQQHQAAQSLKDVKKSNKGQPNQALIQAGKKIGNSNQNMGLKGPNGP
DLKGLNGALPNNKMGNVAHFAGGNFGAGEGKRVSDINGLMGMGGHQRAYQNHPTSMMMNL
RGLNNNNMLMNESRYMQPQMMYNRATHIPPYTGYYYPYYPSPYLNHQSETADYGAHLFSD
ENTTVPVC




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cocnu_pan_p026158



Represented sequence(s):
COCNU_CATD
Cnu_11166-RA
Unrepresented genome(s):
COCNU_C3B02_v2.0


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba01_g25980.1 orthology 0.454 3 - -
Mba08_g31430.1 orthology 0.477 3 - -
Mba09_g18120.1 orthology 0.481 3 - -
XP_010906973.1 orthology 0.059 1 - -
cocnu_pan_p034793 ultra-paralogy 0.0075 0 - -
musac_pan_p000078 orthology 0.427 3 - -
musac_pan_p017962 orthology 0.386 3 - -
musac_pan_p032178 orthology 0.43 3 - -