Gene cocnu_pan_p032228


Sequence ID cocnu_pan_p032228  add to my list
Species Cocos nucifera
Alias No gene alias
Pangenome status Dispensable (1/2)
Length 440aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 440 amino acids

>cocnu_pan_p032228_COCNU
MRVYMHCEGCSRKVKRCLQGFEGVEEVKTDCRNHKVVVKGKKAAEDPLKVVERIQKKTGR
KFLEAFFSSPLQPPVIAVVLKVHMHCEACSQEIKKRILKMKGVQAAEPDLKASQVAVTGV
VDPPKLVEYVYKRTGKHAVVVKQEPVEKKPDEEKKAADGKDGSKDEKKADAGGEKAEGEK
KDEKEGGGGGGGEEKEKEGGGGASEHAAAGGAAKVVDLMKNELCYYYPRYGVGYAYPPQI
FSDENPNACTEIVMRVYMHCEGCSRKVKRCLQGFEGVEEVKTDCRNHKVVVKGKKAAEDP
LKVVERIQKKTGRKFLEAFFSSPLQPPVIAVVLKVHMHCEACSQEIKKRILKMKGVQAAE
PDLKASQVAVTGVVDPPKLVEYVYKRTGKHAVVVKQEPNELCYYYPRYGVGYAYPPHPYP
PQAYLTPLRSLATRTLTPVL




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cocnu_pan_p032228



Represented sequence(s):
COCNU_CATD
Cnu_22712-RA
Unrepresented genome(s):
COCNU_C3B02_v2.0


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba06_g07140.1 orthology 0.235 4 - -
Mba09_g01180.1 orthology 0.322 4 - -
XP_008798969.1 orthology 0.0819 2 - -
XP_010913005.1 orthology 0.0622 1 - -
XP_019703519.1 orthology 0.0622 1 - -
cocnu_pan_p033823 ultra-paralogy 0.0288 0 - -
musac_pan_p001323 orthology 0.263 4 - -
musac_pan_p006095 orthology 0.238 4 - -
musac_pan_p033691 orthology 0.533 3 - -